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All other stuff (Ant, Maven, Tomcat, Eclipse, etc.) that I install manually (I never install anything Java-related using the Ubuntu package manager) goes into /opt (after I chown it).
you will see a little icon in the kicker bar/taskbar when there are updates.
Our tests show that this works out of the box on both OS X and Linux, Chrome as well as Firefox.
However, this does not take care of the lock-in situation that we wanted to avoid. Pidgin is available prepackaged for Windows, OS X, Cent OS/RHEL, Fedora, Ubuntu - and as source code of course.
This was a big benefit for us, as we run Google Apps on our domain.
So, first out was trying video and voice directly from within the web interface to Google Apps.